IL_6V3E_031

3D structure

PDB id

6V3E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Acinetobacter baumannii Ribosome: 30S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

GAGAG*UGGC

Length

9 nucleotides

Bulged bases

6V3E|1|sN1|A|662

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6V3E_031 not in the Motif Atlas

Homologous match to IL_5J7L_033

Geometric discrepancy: 0.1137

The information below is about IL_5J7L_033

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

6V3E|1|sN1|G|659
6V3E|1|sN1|A|660
6V3E|1|sN1|G|661
6V3E|1|sN1|A|662
6V3E|1|sN1|G|663
*
6V3E|1|sN1|U|737
6V3E|1|sN1|G|738
6V3E|1|sN1|G|739
6V3E|1|sN1|C|740

Current chains

Chain sN1

16s Ribosomal RNA

Nearby chains

Chain f

30S ribosomal protein S6

Chain o

30S ribosomal protein S15

Chain r

30S ribosomal protein S18