IL_6V3E_039

3D structure

PDB id

6V3E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Acinetobacter baumannii Ribosome: 30S subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

GCA*UUCCC

Length

8 nucleotides

Bulged bases

6V3E|1|sN1|C|931

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6V3E_039 not in the Motif Atlas

Homologous match to IL_5J7L_041

Geometric discrepancy: 0.4393

The information below is about IL_5J7L_041

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_47078.3

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

4

Unit IDs

6V3E|1|sN1|G|930
6V3E|1|sN1|C|931
6V3E|1|sN1|A|932
*
6V3E|1|sN1|U|1377
6V3E|1|sN1|U|1378
6V3E|1|sN1|C|1379
6V3E|1|sN1|C|1380
6V3E|1|sN1|C|1381

Current chains

Chain sN1

16s Ribosomal RNA

Nearby chains

Chain g

30S ribosomal protein S7

Chain i

30S ribosomal protein S9