IL_6VA1_010

3D structure

PDB id

6VA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Solution Structure of the Tau pre-mRNA Exon 10 Splicing Regulatory Element

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

GGC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VA1_010 not in the Motif Atlas

Geometric match to IL_4J50_001

Geometric discrepancy: 0.2372

The information below is about IL_4J50_001

Detailed Annotation

Isolated cWH basepair

Broad Annotation

Isolated cWH basepair

Motif group

IL_10892.3

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

61

Unit IDs

6VA1|9|A|G|3
6VA1|9|A|G|4
6VA1|9|A|C|5
*
6VA1|9|B|G|17
6VA1|9|B|U|18
6VA1|9|B|C|19

Current chains

Chain A

RNA (5'-R(*CP*CP*GP*GP*CP*AP*GP*UP*GP*UP*G)-3')

Chain B

RNA (5'-R(*CP*AP*CP*AP*CP*GP*UP*CP*GP*G)-3')

Nearby chains