6VA1 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
No loops found
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_6VA1_001 | 1/A/5:7, 1/B/16:17 | Single stack bend | geometric IL_5J7L_032 NA | |
| IL_6VA1_002 | 2/A/5:7, 2/B/16:17 | Single stack bend | geometric IL_4WF9_007 IL_15011.4 | |
| IL_6VA1_003 | 3/A/5:7, 3/B/16:17 | Single stack bend | geometric IL_5J7L_249 NA | |
| IL_6VA1_004 | 4/A/5:7, 4/B/16:17 | Single stack bend | geometric IL_4LFB_041 IL_15011.4 | |
| IL_6VA1_005 | 5/A/5:7, 5/B/16:17 | Single stack bend | geometric IL_4LFB_041 IL_15011.4 | |
| IL_6VA1_006 | 6/A/5:7, 6/B/16:17 | Single stack bend | geometric IL_5J7L_249 NA | |
| IL_6VA1_007 | 7/A/5:7, 7/B/16:17 | Single stack bend | geometric IL_4LFB_041 IL_15011.4 | |
| IL_6VA1_009 | 8/A/5:7, 8/B/16:17 | Single stack bend | geometric IL_4LFB_041 IL_15011.4 | |
| IL_6VA1_011 | 9/A/5:7, 9/B/16:17 | Single stack bend | geometric IL_5J7L_249 NA | |
| IL_6VA1_012 | 10/A/5:7, 10/B/16:17 | Single stack bend | geometric IL_4WF9_007 IL_15011.4 | |
| IL_6VA1_013 | 11/A/5:7, 11/B/16:17 | Single stack bend | geometric IL_5J7L_249 NA | |
| IL_6VA1_014 | 12/A/5:7, 12/B/16:17 | Single stack bend | geometric IL_4LFB_041 IL_15011.4 | |
| IL_6VA1_015 | 13/A/5:7, 13/B/16:17 | Single stack bend | geometric IL_5J7L_249 NA | |
| IL_6VA1_016 | 14/A/5:7, 14/B/16:17 | Single stack bend | geometric IL_7A0S_005 IL_15011.4 | |
| IL_6VA1_017 | 15/A/5:7, 15/B/16:17 | Single stack bend | geometric IL_5J7L_249 NA | |
| IL_6VA1_018 | 16/A/5:7, 16/B/16:17 | Single stack bend | geometric IL_5J7L_032 NA | |
| IL_6VA1_019 | 17/A/5:7, 17/B/16:17 | Single stack bend | geometric IL_5TBW_009 NA | |
| IL_6VA1_020 | 18/A/5:7, 18/B/16:17 | Single stack bend | geometric IL_5J7L_032 NA | |
| IL_6VA1_021 | 19/A/5:7, 19/B/16:17 | Single stack bend | geometric IL_7A0S_005 IL_15011.4 | |
| IL_6VA1_022 | 20/A/3:5, 20/B/17:19 | Isolated non-canonical cWW pair | geometric IL_5TBW_110 NA | |
| IL_6VA1_023 | 20/A/5:7, 20/B/16:17 | Single stack bend | geometric IL_5J7L_249 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_6VA1_008 | Isolated non-canonical cWW pair | ||
| IL_6VA1_010 | Isolated cWH basepair |
Valid loops
No loops found
Problematic loops
No problematic loops
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