IL_6VLZ_040

3D structure

PDB id

6VLZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human mitochondrial ribosome-EF-G1 complex (ClassI)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.97 Å

Loop

Sequence

AG*CCU

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VLZ_040 not in the Motif Atlas

Geometric match to IL_7KGA_006

Geometric discrepancy: 0.2635

The information below is about IL_7KGA_006

Detailed Annotation

Single stack bend

Broad Annotation

Single stack bend

Motif group

IL_90176.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

8

Unit IDs

6VLZ|1|A|A|2940
6VLZ|1|A|G|2941
*
6VLZ|1|A|C|2985
6VLZ|1|A|C|2986
6VLZ|1|A|U|2987

Current chains

Chain A

16s rRNA

Nearby chains

Chain E

39S ribosomal protein L3, mitochondrial

Chain o

Ribosomal protein 63, mitochondrial