Motif IL_90176.1 Version IL_90176.1 of this group appears in releases 4.5 to 4.5
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | break | 4 | 5 | 1-5 | 2-5 | 3-4 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_5O6U_004 | 5O6U | 0.4977 | 0 | H+I | non-target DNA + target DNA | DC | 3 | DC | 4 | DG | 5 | * | DC | 24 | DG | 25 | ncWW | ncWW | ncWW | |
| 2 | IL_9AXU_095 | 9AXU | 0.3534 | 1 | 2 | LSU rRNA | U | 2865 | U | 2866 | C | 2868 | * | G | 2882 | A | 2883 | ncWW | ncWW | cWW | |
| 3 | IL_4V83_236 | 4V83 | 0.4198 | 0 | Single stack bend | CV | domain 3 of PSIC IGR IRES RNA | C | 6155 | A | 6156 | A | 6157 | * | U | 6172 | G | 6173 | cWW | cWW | |
| 4 | IL_8P9A_328 | 8P9A | 0.2418 | 1 | Single stack bend | AR | LSU rRNA | G | 2770 | U | 2771 | C | 2773 | * | G | 2787 | C | 2788 | cWW | cWW | |
| 5 | IL_8GLP_141 | 8GLP | 0.0000 | 1 | L5 | LSU rRNA | G | 4347 | A | 4348 | C | 4350 | * | G | 4364 | C | 4365 | cWW | cWW | ||
| 6 | IL_5VSU_003 | 5VSU | 0.2962 | 0 | Single stack bend | I | U6 snRNA | A | 75 | A | 76 | G | 77 | * | C | 69 | U | 70 | cWW | cWW | |
| 7 | IL_9DFE_057 | 9DFE | 0.2728 | 0 | Single stack bend | 1A | LSU rRNA | G | 1448 | A | 1449 | G | 1450 | * | C | 1462 | C | 1463 | cWW | ncWW | cWW |
| 8 | IL_7KGA_006 | 7KGA | 0.3736 | 0 | Single stack bend | B | Flavivirus DB element | A | 37 | C | 38 | U | 39 | * | A | 15 | U | 16 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CCG*CG | 1 |
| UUCC*GA | 1 |
| CAA*UG | 1 |
| GUCC*GC | 1 |
| GACC*GC | 1 |
| AAG*CU | 1 |
| GAG*CC | 1 |
| ACU*AU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| A* | 3 |
| C* | 2 |
| UC* | 2 |
| AC* | 1 |
Release history
| Release | 4.5 |
|---|---|
| Date | 2025-12-31 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Single stack bend (5)
- (3)
- Basepair signature
- cWW-L-cWW
- Heat map statistics
- Min 0.24 | Avg 0.38 | Max 0.65
Coloring options: