IL_6VLZ_059

3D structure

PDB id

6VLZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human mitochondrial ribosome-EF-G1 complex (ClassI)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.97 Å

Loop

Sequence

UCU*AAAA

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VLZ_059 not in the Motif Atlas

Geometric match to IL_7RQB_031

Geometric discrepancy: 0.333

The information below is about IL_7RQB_031

Detailed Annotation

Minor groove platform with extra cWW

Broad Annotation

Minor groove platform

Motif group

IL_46796.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

6

Unit IDs

6VLZ|1|AA|U|727
6VLZ|1|AA|C|728
6VLZ|1|AA|U|729
*
6VLZ|1|AA|A|744
6VLZ|1|AA|A|745
6VLZ|1|AA|A|746
6VLZ|1|AA|A|747

Current chains

Chain AA

12s rRNA

Nearby chains

Chain A0

28S ribosomal protein S34, mitochondrial

Chain AM

28S ribosomal protein S16, mitochondrial

Chain AN

28S ribosomal protein S17, mitochondrial