IL_6VLZ_086

3D structure

PDB id

6VLZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human mitochondrial ribosome-EF-G1 complex (ClassI)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.97 Å

Loop

Sequence

UAUA*UG

Length

6 nucleotides

Bulged bases

6VLZ|1|AA|A|1258, 6VLZ|1|AA|U|1259

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VLZ_086 not in the Motif Atlas

Geometric match to IL_6IV9_001

Geometric discrepancy: 0.386

The information below is about IL_6IV9_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_71421.3

Basepair signature

cWW-cWW

Number of instances in this motif group

33

Unit IDs

6VLZ|1|AA|U|1257
6VLZ|1|AA|A|1258
6VLZ|1|AA|U|1259
6VLZ|1|AA|A|1260
*
6VLZ|1|AA|U|1335
6VLZ|1|AA|G|1336

Current chains

Chain AA

12s rRNA

Nearby chains

Chain AD

28S ribosomal protein S5, mitochondrial

Chain AK

28S ribosomal protein S14, mitochondrial

Chain AZ

28S ribosomal protein S33, mitochondrial