IL_6VMI_007
3D structure
- PDB id
- 6VMI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the human mitochondrial ribosome-EF-G1 complex (ClassIII)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.96 Å
Loop
- Sequence
- GAAAC*GUGAUAGC
- Length
- 13 nucleotides
- Bulged bases
- 6VMI|1|A|G|2011, 6VMI|1|A|G|2015
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6VMI_007 not in the Motif Atlas
- Homologous match to IL_5J7L_260
- Geometric discrepancy: 0.2724
- The information below is about IL_5J7L_260
- Detailed Annotation
- tHW-tHW cross-strand stack
- Broad Annotation
- No text annotation
- Motif group
- IL_54041.2
- Basepair signature
- cWW-L-R-L-R-tWH-L-cWW
- Number of instances in this motif group
- 7
Unit IDs
6VMI|1|A|G|1906
6VMI|1|A|A|1907
6VMI|1|A|A|1908
6VMI|1|A|A|1909
6VMI|1|A|C|1910
*
6VMI|1|A|G|2009
6VMI|1|A|U|2010
6VMI|1|A|G|2011
6VMI|1|A|A|2012
6VMI|1|A|U|2013
6VMI|1|A|A|2014
6VMI|1|A|G|2015
6VMI|1|A|C|2016
Current chains
- Chain A
- 16s rRNA
Nearby chains
- Chain F
- 39S ribosomal protein L4, mitochondrial
- Chain M
- 39S ribosomal protein L15, mitochondrial
- Chain d
- 39S ribosomal protein L45, mitochondrial
- Chain i
- 39S ribosomal protein L51, mitochondrial
Coloring options: