IL_6VMI_065

3D structure

PDB id

6VMI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human mitochondrial ribosome-EF-G1 complex (ClassIII)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

UUU*AA

Length

5 nucleotides

Bulged bases

6VMI|1|AA|U|831

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VMI_065 not in the Motif Atlas

Geometric match to IL_2OIU_003

Geometric discrepancy: 0.356

The information below is about IL_2OIU_003

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

149

Unit IDs

6VMI|1|AA|U|830
6VMI|1|AA|U|831
6VMI|1|AA|U|832
*
6VMI|1|AA|A|855
6VMI|1|AA|A|856

Current chains

Chain AA

12s rRNA

Nearby chains

Chain AM

28S ribosomal protein S16, mitochondrial

Chain AT

28S ribosomal protein S25, mitochondrial

Chain v

Elongation factor G, mitochondrial