IL_6VMI_066

3D structure

PDB id

6VMI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human mitochondrial ribosome-EF-G1 complex (ClassIII)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

GCAAU*AC

Length

7 nucleotides

Bulged bases

6VMI|1|AA|A|836

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VMI_066 not in the Motif Atlas

Geometric match to IL_5J7L_018

Geometric discrepancy: 0.2447

The information below is about IL_5J7L_018

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_03109.3

Basepair signature

cWW-cWS-tWH-cWW-L

Number of instances in this motif group

6

Unit IDs

6VMI|1|AA|G|834
6VMI|1|AA|C|835
6VMI|1|AA|A|836
6VMI|1|AA|A|837
6VMI|1|AA|U|838
*
6VMI|1|AA|A|852
6VMI|1|AA|C|853

Current chains

Chain AA

12s rRNA

Nearby chains

Chain AM

28S ribosomal protein S16, mitochondrial

Chain AT

28S ribosomal protein S25, mitochondrial

Chain AU

28S ribosomal protein S26, mitochondrial