IL_6VMI_070

3D structure

PDB id

6VMI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human mitochondrial ribosome-EF-G1 complex (ClassIII)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

CGUAAAG*CG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VMI_070 not in the Motif Atlas

Geometric match to IL_6JXM_001

Geometric discrepancy: 0.2203

The information below is about IL_6JXM_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_05670.1

Basepair signature

cWW-cWW

Number of instances in this motif group

9

Unit IDs

6VMI|1|AA|C|935
6VMI|1|AA|G|936
6VMI|1|AA|U|937
6VMI|1|AA|A|938
6VMI|1|AA|A|939
6VMI|1|AA|A|940
6VMI|1|AA|G|941
*
6VMI|1|AA|C|1133
6VMI|1|AA|G|1134

Current chains

Chain AA

12s rRNA

Nearby chains

Chain A3

Aurora kinase A-interacting protein

Chain AJ

28S ribosomal protein S12, mitochondrial