IL_6VMI_076

3D structure

PDB id

6VMI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human mitochondrial ribosome-EF-G1 complex (ClassIII)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

GACCC*GC

Length

7 nucleotides

Bulged bases

6VMI|1|AA|C|1064

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VMI_076 not in the Motif Atlas

Geometric match to IL_5J7L_036

Geometric discrepancy: 0.356

The information below is about IL_5J7L_036

Detailed Annotation

Left turn

Broad Annotation

Left turn

Motif group

IL_29346.2

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

3

Unit IDs

6VMI|1|AA|G|1062
6VMI|1|AA|A|1063
6VMI|1|AA|C|1064
6VMI|1|AA|C|1065
6VMI|1|AA|C|1066
*
6VMI|1|AA|G|1092
6VMI|1|AA|C|1093

Current chains

Chain AA

12s rRNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain AI

28S ribosomal protein S11, mitochondrial

Chain D

39S ribosomal protein L2, mitochondrial