IL_6VMI_094

3D structure

PDB id

6VMI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human mitochondrial ribosome-EF-G1 complex (ClassIII)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

CCG*CAUG

Length

7 nucleotides

Bulged bases

6VMI|1|AA|C|1484, 6VMI|1|AA|U|1568

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VMI_094 not in the Motif Atlas

Geometric match to IL_4V88_463

Geometric discrepancy: 0.2396

The information below is about IL_4V88_463

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

6VMI|1|AA|C|1483
6VMI|1|AA|C|1484
6VMI|1|AA|G|1485
*
6VMI|1|AA|C|1566
6VMI|1|AA|A|1567
6VMI|1|AA|U|1568
6VMI|1|AA|G|1569

Current chains

Chain AA

12s rRNA

Nearby chains

Chain A3

Aurora kinase A-interacting protein

Chain A6

P-site and E-site tRNA