IL_6VMI_099

3D structure

PDB id

6VMI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human mitochondrial ribosome-EF-G1 complex (ClassIII)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.96 Å

Loop

Sequence

ACUU*AUUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VMI_099 not in the Motif Atlas

Geometric match to IL_3R2D_002

Geometric discrepancy: 0.2437

The information below is about IL_3R2D_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

6VMI|1|AA|A|1507
6VMI|1|AA|C|1508
6VMI|1|AA|U|1509
6VMI|1|AA|U|1510
*
6VMI|1|AA|A|1540
6VMI|1|AA|U|1541
6VMI|1|AA|U|1542
6VMI|1|AA|U|1543

Current chains

Chain AA

12s rRNA

Nearby chains

Chain A0

28S ribosomal protein S34, mitochondrial

Chain A3

Aurora kinase A-interacting protein

Chain L

39S ribosomal protein L14, mitochondrial