IL_6VMY_002

3D structure

PDB id

6VMY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the B. subtilis cobalamin riboswitch

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

GUAAU*AGAGCC

Length

11 nucleotides

Bulged bases

6VMY|1|A|A|282

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70627.3

Basepair signature

cWW-L-R-tHW-cWW

Number of instances in this motif group

3

Unit IDs

6VMY|1|A|G|279
6VMY|1|A|U|280
6VMY|1|A|A|281
6VMY|1|A|A|282
6VMY|1|A|U|283
*
6VMY|1|A|A|297
6VMY|1|A|G|298
6VMY|1|A|A|299
6VMY|1|A|G|300
6VMY|1|A|C|301
6VMY|1|A|C|302

Current chains

Chain A

B. subtilis cobalamin riboswitch

Nearby chains