IL_6VRB_001

3D structure

PDB id

6VRB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of AcrVIA1-Cas13(crRNA) complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AC*GACU

Length

6 nucleotides

Bulged bases

6VRB|1|B|A|23, 6VRB|1|B|C|24

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VRB_001 not in the Motif Atlas

Geometric match to IL_5XWP_001

Geometric discrepancy: 0.1223

The information below is about IL_5XWP_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_71421.2

Basepair signature

cWW-cWW

Number of instances in this motif group

35

Unit IDs

6VRB|1|B|A|5
6VRB|1|B|C|6
*
6VRB|1|B|G|22
6VRB|1|B|A|23
6VRB|1|B|C|24
6VRB|1|B|U|25

Current chains

Chain B

RNA (52-MER)

Nearby chains

Chain A

CRISPR-associated endoribonuclease Cas13a

Chain C

AcrVIA1