IL_6VU1_029

3D structure

PDB id

6VU1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cap3G-TAR-F1 is an RNA hairpin. The 1H-1H NOESY data was collected at 308 K in 10 mM KH2PO4 pH 7.4.

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

UCU*AA

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VU1_029 not in the Motif Atlas

Geometric match to IL_5J7L_032

Geometric discrepancy: 0.262

The information below is about IL_5J7L_032

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_26793.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

16

Unit IDs

6VU1|15|A|U|4
6VU1|15|A|C|5
6VU1|15|A|U|6
*
6VU1|15|A|A|53
6VU1|15|A|A|54

Current chains

Chain A

RNA (34-MER)

Nearby chains