IL_6VU3_020

3D structure

PDB id

6VU3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Escherichia coli transcription-translation complex A (TTC-A) containing mRNA with a 12 nt long spacer

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VU3_020 not in the Motif Atlas

Geometric match to IL_6CZR_359

Geometric discrepancy: 0.2156

The information below is about IL_6CZR_359

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.2

Basepair signature

cWW-tSH-tWH-cWH-tSS-tHW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

6VU3|1|D|U|409
6VU3|1|D|G|410
6VU3|1|D|A|411
6VU3|1|D|A|412
6VU3|1|D|G|413
6VU3|1|D|A|414
6VU3|1|D|A|415
6VU3|1|D|G|416
*
6VU3|1|D|U|427
6VU3|1|D|G|428
6VU3|1|D|U|429
6VU3|1|D|A|430
6VU3|1|D|A|431
6VU3|1|D|A|432
6VU3|1|D|G|433

Current chains

Chain D

16S rRNA

Nearby chains

Chain J

30S ribosomal protein S4