3D structure

PDB id
6VU3 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of Escherichia coli transcription-translation complex A (TTC-A) containing mRNA with a 12 nt long spacer
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
GGCCAG*CGGUAAUAC
Length
15 nucleotides
Bulged bases
6VU3|1|D|A|532, 6VU3|1|D|U|534, 6VU3|1|D|A|535
QA status
Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6VU3_025 not in the Motif Atlas
Homologous match to IL_4LFB_021
Geometric discrepancy: 0.0768
The information below is about IL_4LFB_021
Detailed Annotation
Kink-turn related
Broad Annotation
No text annotation
Motif group
IL_54177.4
Basepair signature
cWW-cSW-tWH-L-R-L-R-tHS-cWW
Number of instances in this motif group
4

Unit IDs

6VU3|1|D|G|515
6VU3|1|D|G|517
6VU3|1|D|C|518
6VU3|1|D|C|519
6VU3|1|D|A|520
6VU3|1|D|G|521
*
6VU3|1|D|C|528
6VU3|1|D|G|529
6VU3|1|D|G|530
6VU3|1|D|U|531
6VU3|1|D|A|532
6VU3|1|D|A|533
6VU3|1|D|U|534
6VU3|1|D|A|535
6VU3|1|D|C|536

Current chains

Chain D
16S rRNA

Nearby chains

Chain 7
mRNA with 12 nt long spacer
Chain I
30S ribosomal protein S3
Chain J
30S ribosomal protein S4
Chain R
30S ribosomal protein S12

Coloring options:


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