IL_6VU3_056

3D structure

PDB id

6VU3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Escherichia coli transcription-translation complex A (TTC-A) containing mRNA with a 12 nt long spacer

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GAAG*CGGACC

Length

10 nucleotides

Bulged bases

6VU3|1|D|A|1257, 6VU3|1|D|A|1280

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VU3_056 not in the Motif Atlas

Homologous match to IL_4LFB_052

Geometric discrepancy: 0.1258

The information below is about IL_4LFB_052

Detailed Annotation

180 degree turn

Broad Annotation

No text annotation

Motif group

IL_08849.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

6VU3|1|D|G|1255
6VU3|1|D|A|1256
6VU3|1|D|A|1257
6VU3|1|D|G|1258
*
6VU3|1|D|C|1277
6VU3|1|D|G|1278
6VU3|1|D|G|1279
6VU3|1|D|A|1280
6VU3|1|D|C|1281
6VU3|1|D|C|1282

Current chains

Chain D

16S rRNA

Nearby chains

Chain I

30S ribosomal protein S3

Chain P

30S ribosomal protein S10

Chain S

30S ribosomal protein S14