IL_6VU3_140
3D structure
- PDB id
- 6VU3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Escherichia coli transcription-translation complex A (TTC-A) containing mRNA with a 12 nt long spacer
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- CCGG*CG
- Length
- 6 nucleotides
- Bulged bases
- 6VU3|1|a|C|1838
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6VU3_140 not in the Motif Atlas
- Homologous match to IL_5J7L_314
- Geometric discrepancy: 0.1092
- The information below is about IL_5J7L_314
- Detailed Annotation
- Minor groove platform, major groove intercalation
- Broad Annotation
- Minor groove platform, major groove intercalation
- Motif group
- IL_95583.2
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 11
Unit IDs
6VU3|1|a|C|1837
6VU3|1|a|C|1838
6VU3|1|a|G|1839
6VU3|1|a|G|1840
*
6VU3|1|a|C|1902
6VU3|1|a|G|1903
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain D
- Small subunit ribosomal RNA; SSU rRNA
- Chain h
- 50S ribosomal protein L2
Coloring options: