IL_6VWL_014

3D structure

PDB id

6VWL (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P/E tRNA (rotated conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAUUAG*CGACGAUC

Length

14 nucleotides

Bulged bases

6VWL|1|1|U|244, 6VWL|1|1|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VWL_014 not in the Motif Atlas

Homologous match to IL_6CZR_123

Geometric discrepancy: 0.1481

The information below is about IL_6CZR_123

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.2

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

6

Unit IDs

6VWL|1|1|G|242
6VWL|1|1|A|243
6VWL|1|1|U|244
6VWL|1|1|U|245
6VWL|1|1|A|246
6VWL|1|1|G|247
*
6VWL|1|1|C|277
6VWL|1|1|G|278
6VWL|1|1|A|279
6VWL|1|1|C|280
6VWL|1|1|G|281
6VWL|1|1|A|282
6VWL|1|1|U|283
6VWL|1|1|C|284

Current chains

Chain 1

16S ribosomal RNA

Nearby chains

Chain k

30S ribosomal protein S12

Chain p

30S ribosomal protein S17