3D structure

PDB id
6VWL (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome bound to HIV frameshifting stem-loop (FSS) and P/E tRNA (rotated conformation)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
GUGCCAG*CGGUAAUAC
Length
16 nucleotides
Bulged bases
6VWL|1|1|G|530, 6VWL|1|1|A|532, 6VWL|1|1|U|534
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6VWL_026 not in the Motif Atlas
Homologous match to IL_4LFB_021
Geometric discrepancy: 0.547
The information below is about IL_4LFB_021
Detailed Annotation
Kink-turn related
Broad Annotation
No text annotation
Motif group
IL_54177.4
Basepair signature
cWW-cSW-tWH-L-R-L-R-tHS-cWW
Number of instances in this motif group
4

Unit IDs

6VWL|1|1|G|515
6VWL|1|1|U|516
6VWL|1|1|G|517
6VWL|1|1|C|518
6VWL|1|1|C|519
6VWL|1|1|A|520
6VWL|1|1|G|521
*
6VWL|1|1|C|528
6VWL|1|1|G|529
6VWL|1|1|G|530
6VWL|1|1|U|531
6VWL|1|1|A|532
6VWL|1|1|A|533
6VWL|1|1|U|534
6VWL|1|1|A|535
6VWL|1|1|C|536

Current chains

Chain 1
16S ribosomal RNA

Nearby chains

Chain 4
HIV ribosomal frameshift signal
Chain b
30S ribosomal protein S3
Chain k
30S ribosomal protein S12

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1435 s