IL_6VWL_043

3D structure

PDB id

6VWL (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P/E tRNA (rotated conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GG*CAC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VWL_043 not in the Motif Atlas

Homologous match to IL_4LFB_038

Geometric discrepancy: 0.2832

The information below is about IL_4LFB_038

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_51454.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

45

Unit IDs

6VWL|1|1|G|953
6VWL|1|1|G|954
*
6VWL|1|1|C|1226
6VWL|1|1|A|1227
6VWL|1|1|C|1228

Current chains

Chain 1

16S ribosomal RNA

Nearby chains

Chain 5

Transfer RNA; tRNA

Chain l

30S ribosomal protein S13

Chain r

30S ribosomal protein S19