IL_6VWL_053

3D structure

PDB id

6VWL (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P/E tRNA (rotated conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UACAAAG*CAUAAAG

Length

14 nucleotides

Bulged bases

6VWL|1|1|U|1286

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VWL_053 not in the Motif Atlas

Homologous match to IL_5J7L_054

Geometric discrepancy: 0.271

The information below is about IL_5J7L_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_09129.2

Basepair signature

cWW-L-R-tWH-L-R-L-tWW-cWW

Number of instances in this motif group

2

Unit IDs

6VWL|1|1|U|1247
6VWL|1|1|A|1248
6VWL|1|1|C|1249
6VWL|1|1|A|1250
6VWL|1|1|A|1251
6VWL|1|1|A|1252
6VWL|1|1|G|1253
*
6VWL|1|1|C|1284
6VWL|1|1|A|1285
6VWL|1|1|U|1286
6VWL|1|1|A|1287
6VWL|1|1|A|1288
6VWL|1|1|A|1289
6VWL|1|1|G|1290

Current chains

Chain 1

16S ribosomal RNA

Nearby chains

Chain f

30S ribosomal protein S7

Chain h

30S ribosomal protein S9

Chain i

30S ribosomal protein S10

Chain m

30S ribosomal protein S14