IL_6VWL_063

3D structure

PDB id

6VWL (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P/E tRNA (rotated conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AAGAAG*CCACU

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VWL_063 not in the Motif Atlas

Geometric match to IL_4V9F_018

Geometric discrepancy: 0.3769

The information below is about IL_4V9F_018

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared

Motif group

IL_97631.1

Basepair signature

cWW-L-R-L-R-L-tHS-cWW

Number of instances in this motif group

1

Unit IDs

6VWL|1|1|A|1430
6VWL|1|1|A|1431
6VWL|1|1|G|1432
6VWL|1|1|A|1433
6VWL|1|1|A|1434
6VWL|1|1|G|1435
*
6VWL|1|1|C|1466
6VWL|1|1|C|1467
6VWL|1|1|A|1468
6VWL|1|1|C|1469
6VWL|1|1|U|1470

Current chains

Chain 1

16S ribosomal RNA

Nearby chains

Chain 2

Large subunit ribosomal RNA; LSU rRNA

Chain I

50S ribosomal protein L14

Chain N

50S ribosomal protein L19

Chain s

30S ribosomal protein S20