IL_6VWL_071

3D structure

PDB id

6VWL (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P/E tRNA (rotated conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAACUG*CUAAGUAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VWL_071 not in the Motif Atlas

Homologous match to IL_7A0S_006

Geometric discrepancy: 0.0848

The information below is about IL_7A0S_006

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.10

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

6VWL|1|2|G|188
6VWL|1|2|G|189
6VWL|1|2|A|190
6VWL|1|2|A|191
6VWL|1|2|C|192
6VWL|1|2|U|193
6VWL|1|2|G|194
*
6VWL|1|2|C|201
6VWL|1|2|U|202
6VWL|1|2|A|203
6VWL|1|2|A|204
6VWL|1|2|G|205
6VWL|1|2|U|206
6VWL|1|2|A|207
6VWL|1|2|C|208

Current chains

Chain 2

23S ribosomal RNA

Nearby chains

Chain AA

50S ribosomal protein L34

Chain J

50S ribosomal protein L15

Chain V

50S ribosomal protein L28