IL_6VWL_081

3D structure

PDB id

6VWL (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P/E tRNA (rotated conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

6VWL|1|2|G|801, 6VWL|1|2|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VWL_081 not in the Motif Atlas

Geometric match to IL_5J7L_260

Geometric discrepancy: 0.0898

The information below is about IL_5J7L_260

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

6VWL|1|2|G|674
6VWL|1|2|A|675
6VWL|1|2|A|676
6VWL|1|2|A|677
6VWL|1|2|C|678
*
6VWL|1|2|G|799
6VWL|1|2|A|800
6VWL|1|2|G|801
6VWL|1|2|A|802
6VWL|1|2|U|803
6VWL|1|2|A|804
6VWL|1|2|G|805
6VWL|1|2|C|806

Current chains

Chain 2

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L4

Chain J

50S ribosomal protein L15