IL_6VWL_081
3D structure
- PDB id
- 6VWL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome bound to HIV frameshifting stem-loop (FSS) and P/E tRNA (rotated conformation)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GAAAC*GAGAUAGC
- Length
- 13 nucleotides
- Bulged bases
- 6VWL|1|2|G|801, 6VWL|1|2|G|805
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6VWL_081 not in the Motif Atlas
- Geometric match to IL_5J7L_260
- Geometric discrepancy: 0.0898
- The information below is about IL_5J7L_260
- Detailed Annotation
- tHW-tHW cross-strand stack
- Broad Annotation
- No text annotation
- Motif group
- IL_54041.2
- Basepair signature
- cWW-L-R-L-R-tWH-L-cWW
- Number of instances in this motif group
- 7
Unit IDs
6VWL|1|2|G|674
6VWL|1|2|A|675
6VWL|1|2|A|676
6VWL|1|2|A|677
6VWL|1|2|C|678
*
6VWL|1|2|G|799
6VWL|1|2|A|800
6VWL|1|2|G|801
6VWL|1|2|A|802
6VWL|1|2|U|803
6VWL|1|2|A|804
6VWL|1|2|G|805
6VWL|1|2|C|806
Current chains
- Chain 2
- 23S ribosomal RNA
Nearby chains
- Chain C
- 50S ribosomal protein L4
- Chain J
- 50S ribosomal protein L15
Coloring options: