3D structure

PDB id
6VWL (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome bound to HIV frameshifting stem-loop (FSS) and P/E tRNA (rotated conformation)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
GAAG*CGGC
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6VWL_103 not in the Motif Atlas
Homologous match to IL_5J7L_283
Geometric discrepancy: 0.2791
The information below is about IL_5J7L_283
Detailed Annotation
Tandem non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_85033.2
Basepair signature
cWW-cWW-cWW-cWW
Number of instances in this motif group
35

Unit IDs

6VWL|1|2|G|1038
6VWL|1|2|A|1039
6VWL|1|2|A|1040
6VWL|1|2|G|1041
*
6VWL|1|2|C|1114
6VWL|1|2|G|1115
6VWL|1|2|G|1116
6VWL|1|2|C|1117

Current chains

Chain 2
23S ribosomal RNA

Nearby chains

Chain K
50S ribosomal protein L16
Chain T
50S ribosomal protein L25

Coloring options:


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