IL_6VWL_104
3D structure
- PDB id
- 6VWL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome bound to HIV frameshifting stem-loop (FSS) and P/E tRNA (rotated conformation)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CGU*AGUG
- Length
- 7 nucleotides
- Bulged bases
- 6VWL|1|2|G|1248
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6VWL_104 not in the Motif Atlas
- Homologous match to IL_5J7L_286
- Geometric discrepancy: 0.1424
- The information below is about IL_5J7L_286
- Detailed Annotation
- Isolated cWS basepair
- Broad Annotation
- No text annotation
- Motif group
- IL_42997.3
- Basepair signature
- cWW-L-R-cWW
- Number of instances in this motif group
- 20
Unit IDs
6VWL|1|2|C|1196
6VWL|1|2|G|1197
6VWL|1|2|U|1198
*
6VWL|1|2|A|1247
6VWL|1|2|G|1248
6VWL|1|2|U|1249
6VWL|1|2|G|1250
Current chains
- Chain 2
- 23S ribosomal RNA
Nearby chains
- Chain C
- 50S ribosomal protein L4
- Chain J
- 50S ribosomal protein L15
- Chain O
- 50S ribosomal protein L20
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