IL_6VWL_113

3D structure

PDB id

6VWL (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P/E tRNA (rotated conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAAG*CUAAG

Length

10 nucleotides

Bulged bases

6VWL|1|2|A|1420

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VWL_113 not in the Motif Atlas

Homologous match to IL_7RQB_055

Geometric discrepancy: 0.5084

The information below is about IL_7RQB_055

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_89002.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

20

Unit IDs

6VWL|1|2|C|1417
6VWL|1|2|G|1418
6VWL|1|2|A|1419
6VWL|1|2|A|1420
6VWL|1|2|G|1421
*
6VWL|1|2|C|1577
6VWL|1|2|U|1578
6VWL|1|2|A|1579
6VWL|1|2|A|1580
6VWL|1|2|G|1581

Current chains

Chain 2

23S ribosomal RNA

Nearby chains