IL_6VWL_115

3D structure

PDB id

6VWL (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P/E tRNA (rotated conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUAU*AAAUG

Length

9 nucleotides

Bulged bases

6VWL|1|2|U|1554

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VWL_115 not in the Motif Atlas

Homologous match to IL_5J7L_297

Geometric discrepancy: 0.0958

The information below is about IL_5J7L_297

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_99646.2

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

6VWL|1|2|C|1437
6VWL|1|2|U|1438
6VWL|1|2|A|1439
6VWL|1|2|U|1440
*
6VWL|1|2|A|1551
6VWL|1|2|A|1552
6VWL|1|2|A|1553
6VWL|1|2|U|1554
6VWL|1|2|G|1555

Current chains

Chain 2

23S ribosomal RNA

Nearby chains