3D structure

PDB id
6VWL (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome bound to HIV frameshifting stem-loop (FSS) and P/E tRNA (rotated conformation)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
AUA*UGUUU
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6VWL_156 not in the Motif Atlas
Geometric match to IL_4V9F_084
Geometric discrepancy: 0.1826
The information below is about IL_4V9F_084
Detailed Annotation
Major groove minor groove platform with extra cWW
Broad Annotation
Major groove minor groove platform with extra cWW
Motif group
IL_51387.3
Basepair signature
cWW-cSH-cWW-cWW
Number of instances in this motif group
21

Unit IDs

6VWL|1|2|A|2459
6VWL|1|2|U|2460
6VWL|1|2|A|2461
*
6VWL|1|2|U|2489
6VWL|1|2|G|2490
6VWL|1|2|U|2491
6VWL|1|2|U|2492
6VWL|1|2|U|2493

Current chains

Chain 2
23S ribosomal RNA

Nearby chains

Chain K
50S ribosomal protein L16

Coloring options:


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