IL_6VWL_178

3D structure

PDB id

6VWL (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P/E tRNA (rotated conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAUGGUAG*CGAGAGUAG

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VWL_178 not in the Motif Atlas

Homologous match to IL_5J7L_359

Geometric discrepancy: 0.0811

The information below is about IL_5J7L_359

Detailed Annotation

Bacterial 5S Loop E

Broad Annotation

Loop E

Motif group

IL_56455.6

Basepair signature

cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

6VWL|1|3|C|71
6VWL|1|3|G|72
6VWL|1|3|A|73
6VWL|1|3|U|74
6VWL|1|3|G|75
6VWL|1|3|G|76
6VWL|1|3|U|77
6VWL|1|3|A|78
6VWL|1|3|G|79
*
6VWL|1|3|C|97
6VWL|1|3|G|98
6VWL|1|3|A|99
6VWL|1|3|G|100
6VWL|1|3|A|101
6VWL|1|3|G|102
6VWL|1|3|U|103
6VWL|1|3|A|104
6VWL|1|3|G|105

Current chains

Chain 3

5S ribosomal RNA

Nearby chains

Chain 2

Large subunit ribosomal RNA; LSU rRNA

Chain K

50S ribosomal protein L16

Chain T

50S ribosomal protein L25

Chain X

50S ribosomal protein L30