IL_6VWL_187

3D structure

PDB id

6VWL (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P/E tRNA (rotated conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAGG*CCGACCUUGAAAUAC

Length

20 nucleotides

Bulged bases

6VWL|1|2|A|2126, 6VWL|1|2|U|2166, 6VWL|1|2|U|2167, 6VWL|1|2|A|2170, 6VWL|1|2|A|2171, 6VWL|1|2|U|2172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VWL_187 not in the Motif Atlas

Homologous match to IL_5J7L_329

Geometric discrepancy: 0.5465

The information below is about IL_5J7L_329

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_87290.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L

Number of instances in this motif group

1

Unit IDs

6VWL|1|2|G|2124
6VWL|1|2|G|2125
6VWL|1|2|A|2126
6VWL|1|2|G|2127
6VWL|1|2|G|2128
*
6VWL|1|2|C|2160
6VWL|1|2|C|2161
6VWL|1|2|G|2162
6VWL|1|2|A|2163
6VWL|1|2|C|2164
6VWL|1|2|C|2165
6VWL|1|2|U|2166
6VWL|1|2|U|2167
6VWL|1|2|G|2168
6VWL|1|2|A|2169
6VWL|1|2|A|2170
6VWL|1|2|A|2171
6VWL|1|2|U|2172
6VWL|1|2|A|2173
6VWL|1|2|C|2174

Current chains

Chain 2

23S ribosomal RNA

Nearby chains

Chain 5

Transfer RNA; tRNA