IL_6VWL_188

3D structure

PDB id

6VWL (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P/E tRNA (rotated conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGGAC*GCC

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VWL_188 not in the Motif Atlas

Geometric match to IL_2OEU_001

Geometric discrepancy: 0.3458

The information below is about IL_2OEU_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_46387.3

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

3

Unit IDs

6VWL|1|1|G|202
6VWL|1|1|G|203
6VWL|1|1|G|204
6VWL|1|1|A|205
6VWL|1|1|C|206
*
6VWL|1|1|G|213
6VWL|1|1|C|214
6VWL|1|1|C|215

Current chains

Chain 1

16S ribosomal RNA

Nearby chains