IL_6VWL_190

3D structure

PDB id

6VWL (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P/E tRNA (rotated conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAC*GAAG

Length

7 nucleotides

Bulged bases

6VWL|1|1|A|1492, 6VWL|1|1|A|1493

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VWL_190 not in the Motif Atlas

Geometric match to IL_3C3Z_002

Geometric discrepancy: 0.2654

The information below is about IL_3C3Z_002

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_31737.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

6VWL|1|1|C|1407
6VWL|1|1|A|1408
6VWL|1|1|C|1409
*
6VWL|1|1|G|1491
6VWL|1|1|A|1492
6VWL|1|1|A|1493
6VWL|1|1|G|1494

Current chains

Chain 1

16S ribosomal RNA

Nearby chains

Chain 2

Large subunit ribosomal RNA; LSU rRNA

Chain 4

HIV ribosomal frameshift signal

Chain k

30S ribosomal protein S12