IL_6VWM_025
3D structure
- PDB id
- 6VWM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CGGCUAAC*GG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6VWM_025 not in the Motif Atlas
- Homologous match to IL_4LFB_020
- Geometric discrepancy: 0.24
- The information below is about IL_4LFB_020
- Detailed Annotation
- SSU/LSU pseudoknot
- Broad Annotation
- No text annotation
- Motif group
- IL_41203.4
- Basepair signature
- cWW-L-cWW-L-L-R-cSH
- Number of instances in this motif group
- 11
Unit IDs
6VWM|1|1|C|504
6VWM|1|1|G|505
6VWM|1|1|G|506
6VWM|1|1|C|507
6VWM|1|1|U|508
6VWM|1|1|A|509
6VWM|1|1|A|510
6VWM|1|1|C|511
*
6VWM|1|1|G|540
6VWM|1|1|G|541
Current chains
- Chain 1
- 16S ribosomal RNA
Nearby chains
- Chain c
- 30S ribosomal protein S4
- Chain k
- 30S ribosomal protein S12
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