IL_6VWM_039
3D structure
- PDB id
- 6VWM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GGAGUACG*UAAAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6VWM_039 not in the Motif Atlas
- Homologous match to IL_5J7L_038
- Geometric discrepancy: 0.1357
- The information below is about IL_5J7L_038
- Detailed Annotation
- 8x6 Sarcin-Ricin with inserted Y; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_41756.4
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW-L
- Number of instances in this motif group
- 4
Unit IDs
6VWM|1|1|G|887
6VWM|1|1|G|888
6VWM|1|1|A|889
6VWM|1|1|G|890
6VWM|1|1|U|891
6VWM|1|1|A|892
6VWM|1|1|C|893
6VWM|1|1|G|894
*
6VWM|1|1|U|905
6VWM|1|1|A|906
6VWM|1|1|A|907
6VWM|1|1|A|908
6VWM|1|1|A|909
6VWM|1|1|C|910
Current chains
- Chain 1
- 16S ribosomal RNA
Nearby chains
- Chain k
- 30S ribosomal protein S12
Coloring options: