IL_6VWM_043
3D structure
- PDB id
- 6VWM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GACAU*AC
- Length
- 7 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6VWM_043 not in the Motif Atlas
- Geometric match to IL_6CZR_151
- Geometric discrepancy: 0.3169
- The information below is about IL_6CZR_151
- Detailed Annotation
- Minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_47078.2
- Basepair signature
- cWW-cWS-L-cWW-L
- Number of instances in this motif group
- 6
Unit IDs
6VWM|1|1|G|993
6VWM|1|1|A|994
6VWM|1|1|C|995
6VWM|1|1|A|996
6VWM|1|1|U|997
*
6VWM|1|1|A|1044
6VWM|1|1|C|1045
Current chains
- Chain 1
- 16S ribosomal RNA
Nearby chains
- Chain m
- 30S ribosomal protein S14
Coloring options: