IL_6VWM_043

3D structure

PDB id

6VWM (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GACAU*AC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VWM_043 not in the Motif Atlas

Geometric match to IL_6CZR_151

Geometric discrepancy: 0.3169

The information below is about IL_6CZR_151

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_47078.2

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

6

Unit IDs

6VWM|1|1|G|993
6VWM|1|1|A|994
6VWM|1|1|C|995
6VWM|1|1|A|996
6VWM|1|1|U|997
*
6VWM|1|1|A|1044
6VWM|1|1|C|1045

Current chains

Chain 1

16S ribosomal RNA

Nearby chains

Chain m

30S ribosomal protein S14