IL_6VWM_050

3D structure

PDB id

6VWM (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUUGC*GAACUC

Length

11 nucleotides

Bulged bases

6VWM|1|1|U|1126

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VWM_050 not in the Motif Atlas

Homologous match to IL_5J7L_051

Geometric discrepancy: 0.2104

The information below is about IL_5J7L_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_06691.1

Basepair signature

cWW-cWS-L-R-L-R-cWW-L

Number of instances in this motif group

2

Unit IDs

6VWM|1|1|G|1124
6VWM|1|1|U|1125
6VWM|1|1|U|1126
6VWM|1|1|G|1127
6VWM|1|1|C|1128
*
6VWM|1|1|G|1144
6VWM|1|1|A|1145
6VWM|1|1|A|1146
6VWM|1|1|C|1147
6VWM|1|1|U|1148
6VWM|1|1|C|1149

Current chains

Chain 1

16S ribosomal RNA

Nearby chains

Chain h

30S ribosomal protein S9

Chain i

30S ribosomal protein S10