IL_6VWM_053
3D structure
- PDB id
- 6VWM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- UACAAAG*CAUAAAG
- Length
- 14 nucleotides
- Bulged bases
- 6VWM|1|1|U|1286
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6VWM_053 not in the Motif Atlas
- Homologous match to IL_5J7L_054
- Geometric discrepancy: 0.2352
- The information below is about IL_5J7L_054
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_09129.2
- Basepair signature
- cWW-L-R-tWH-L-R-L-tWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
6VWM|1|1|U|1247
6VWM|1|1|A|1248
6VWM|1|1|C|1249
6VWM|1|1|A|1250
6VWM|1|1|A|1251
6VWM|1|1|A|1252
6VWM|1|1|G|1253
*
6VWM|1|1|C|1284
6VWM|1|1|A|1285
6VWM|1|1|U|1286
6VWM|1|1|A|1287
6VWM|1|1|A|1288
6VWM|1|1|A|1289
6VWM|1|1|G|1290
Current chains
- Chain 1
- 16S ribosomal RNA
Nearby chains
- Chain f
- 30S ribosomal protein S7
- Chain h
- 30S ribosomal protein S9
- Chain i
- 30S ribosomal protein S10
- Chain m
- 30S ribosomal protein S14
Coloring options: