IL_6VWM_054
3D structure
- PDB id
- 6VWM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GAAG*CGGACC
- Length
- 10 nucleotides
- Bulged bases
- 6VWM|1|1|A|1257, 6VWM|1|1|A|1280
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6VWM_054 not in the Motif Atlas
- Homologous match to IL_4LFB_052
- Geometric discrepancy: 0.2809
- The information below is about IL_4LFB_052
- Detailed Annotation
- 180 degree turn
- Broad Annotation
- No text annotation
- Motif group
- IL_08849.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
6VWM|1|1|G|1255
6VWM|1|1|A|1256
6VWM|1|1|A|1257
6VWM|1|1|G|1258
*
6VWM|1|1|C|1277
6VWM|1|1|G|1278
6VWM|1|1|G|1279
6VWM|1|1|A|1280
6VWM|1|1|C|1281
6VWM|1|1|C|1282
Current chains
- Chain 1
- 16S ribosomal RNA
Nearby chains
- Chain b
- 30S ribosomal protein S3
- Chain i
- 30S ribosomal protein S10
- Chain m
- 30S ribosomal protein S14
Coloring options: