IL_6VWM_061

3D structure

PDB id

6VWM (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGAG*UGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VWM_061 not in the Motif Atlas

Homologous match to IL_6CZR_169

Geometric discrepancy: 0.1916

The information below is about IL_6CZR_169

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.14

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

36

Unit IDs

6VWM|1|1|G|1416
6VWM|1|1|G|1417
6VWM|1|1|A|1418
6VWM|1|1|G|1419
*
6VWM|1|1|U|1481
6VWM|1|1|G|1482
6VWM|1|1|A|1483
6VWM|1|1|C|1484

Current chains

Chain 1

16S ribosomal RNA

Nearby chains

Chain 2

Large subunit ribosomal RNA; LSU rRNA