IL_6VWM_062
3D structure
- PDB id
- 6VWM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- AAGAAG*CCACU
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6VWM_062 not in the Motif Atlas
- Geometric match to IL_4V9F_018
- Geometric discrepancy: 0.3816
- The information below is about IL_4V9F_018
- Detailed Annotation
- Triple sheared related
- Broad Annotation
- Triple sheared
- Motif group
- IL_97631.1
- Basepair signature
- cWW-L-R-L-R-L-tHS-cWW
- Number of instances in this motif group
- 1
Unit IDs
6VWM|1|1|A|1430
6VWM|1|1|A|1431
6VWM|1|1|G|1432
6VWM|1|1|A|1433
6VWM|1|1|A|1434
6VWM|1|1|G|1435
*
6VWM|1|1|C|1466
6VWM|1|1|C|1467
6VWM|1|1|A|1468
6VWM|1|1|C|1469
6VWM|1|1|U|1470
Current chains
- Chain 1
- 16S ribosomal RNA
Nearby chains
- Chain 2
- Large subunit ribosomal RNA; LSU rRNA
- Chain I
- 50S ribosomal protein L14
- Chain N
- 50S ribosomal protein L19
- Chain s
- 30S ribosomal protein S20
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