IL_6VWM_070

3D structure

PDB id

6VWM (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGAACUG*CUAAGUAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VWM_070 not in the Motif Atlas

Homologous match to IL_7A0S_006

Geometric discrepancy: 0.0858

The information below is about IL_7A0S_006

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.1

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

18

Unit IDs

6VWM|1|2|G|188
6VWM|1|2|G|189
6VWM|1|2|A|190
6VWM|1|2|A|191
6VWM|1|2|C|192
6VWM|1|2|U|193
6VWM|1|2|G|194
*
6VWM|1|2|C|201
6VWM|1|2|U|202
6VWM|1|2|A|203
6VWM|1|2|A|204
6VWM|1|2|G|205
6VWM|1|2|U|206
6VWM|1|2|A|207
6VWM|1|2|C|208

Current chains

Chain 2

23S ribosomal RNA

Nearby chains

Chain AB

50S ribosomal protein L35

Chain J

50S ribosomal protein L15

Chain V

50S ribosomal protein L28