IL_6VWM_074

3D structure

PDB id

6VWM (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UAG*CAAAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VWM_074 not in the Motif Atlas

Homologous match to IL_5J7L_254

Geometric discrepancy: 0.1545

The information below is about IL_5J7L_254

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_69440.3

Basepair signature

cWW-L-R-cSH-cWW

Number of instances in this motif group

3

Unit IDs

6VWM|1|2|U|293
6VWM|1|2|A|294
6VWM|1|2|G|295
*
6VWM|1|2|C|343
6VWM|1|2|A|344
6VWM|1|2|A|345
6VWM|1|2|A|346
6VWM|1|2|A|347

Current chains

Chain 2

23S ribosomal RNA

Nearby chains

Chain S

50S ribosomal protein L24