IL_6VWM_089
3D structure
- PDB id
- 6VWM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GGGGUAG*CGAAUAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6VWM_089 not in the Motif Atlas
- Homologous match to IL_5J7L_270
- Geometric discrepancy: 0.1153
- The information below is about IL_5J7L_270
- Detailed Annotation
- 7x7 Sarcin-Ricin with intercalated A; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_29198.2
- Basepair signature
- cWW-cWW-L-R-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
6VWM|1|2|G|856
6VWM|1|2|G|857
6VWM|1|2|G|858
6VWM|1|2|G|859
6VWM|1|2|U|860
6VWM|1|2|A|861
6VWM|1|2|G|862
*
6VWM|1|2|C|915
6VWM|1|2|G|916
6VWM|1|2|A|917
6VWM|1|2|A|918
6VWM|1|2|U|919
6VWM|1|2|A|920
6VWM|1|2|C|921
Current chains
- Chain 2
- 23S ribosomal RNA
Nearby chains
- Chain 3
- 5S ribosomal RNA; 5S rRNA
- Chain K
- 50S ribosomal protein L16
- Chain U
- 50S ribosomal protein L27
- Chain X
- 50S ribosomal protein L30
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