IL_6VWM_094

3D structure

PDB id

6VWM (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound to HIV frameshifting stem-loop (FSS) and P-site tRNA (non-rotated conformation, Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GG*UAC

Length

5 nucleotides

Bulged bases

6VWM|1|2|A|896

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6VWM_094 not in the Motif Atlas

Homologous match to IL_5J7L_275

Geometric discrepancy: 0.3966

The information below is about IL_5J7L_275

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_29366.1

Basepair signature

cWW-cWW

Number of instances in this motif group

266

Unit IDs

6VWM|1|2|G|880
6VWM|1|2|G|881
*
6VWM|1|2|U|895
6VWM|1|2|A|896
6VWM|1|2|C|897

Current chains

Chain 2

23S ribosomal RNA

Nearby chains

Chain 4

HIV ribosomal frameshift signal